Single-molecule imaging reveals allosteric stimulation of SARS-CoV-2 spike receptor binding domain by host sialic acid.

Publication date: Jul 19, 2024

Conformational dynamics of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike glycoprotein (S) mediate exposure of the binding site for the cellular receptor, angiotensin-converting enzyme 2 (ACE2). The N-terminal domain (NTD) of S binds terminal sialic acid (SA) moieties on the cell surface, but the functional role of this interaction in virus entry is unknown. Here, we report that NTD-SA interaction enhances both S-mediated virus attachment and ACE2 binding. Through single-molecule FcF6rster resonance energy transfer imaging of individual S trimers, we demonstrate that SA binding to the NTD allosterically shifts the S conformational equilibrium, favoring enhanced exposure of the ACE2-binding site. Antibodies that target the NTD block SA binding, which contributes to their mechanism of neutralization. These findings inform on mechanisms of S activation at the cell surface.

Concepts Keywords
Antibodies ACE2 protein, human
Coronavirus Allosteric Regulation
Enzyme Angiotensin-Converting Enzyme 2
Host Angiotensin-Converting Enzyme 2
Unknown Binding Sites
COVID-19
Humans
N-Acetylneuraminic Acid
N-Acetylneuraminic Acid
Protein Binding
Protein Domains
SARS-CoV-2
Single Molecule Imaging
Spike Glycoprotein, Coronavirus
Spike Glycoprotein, Coronavirus
spike protein, SARS-CoV-2
Virus Attachment
Virus Internalization

Semantics

Type Source Name
disease IDO host
disease VO Severe acute respiratory syndrome coronavirus 2
disease VO Glycoprotein
disease IDO site
drug DRUGBANK Angiotensin II
disease VO report
disease MESH COVID-19

Original Article

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