Estimating the household secondary attack rate and serial interval of COVID-19 using social media.

Estimating the household secondary attack rate and serial interval of COVID-19 using social media.

Publication date: Jul 20, 2024

We propose a method to estimate the household secondary attack rate (hSAR) of COVID-19 in the United Kingdom based on activity on the social media platform X, formerly known as Twitter. Conventional methods of hSAR estimation are resource intensive, requiring regular contact tracing of COVID-19 cases. Our proposed framework provides a complementary method that does not rely on conventional contact tracing or laboratory involvement, including the collection, processing, and analysis of biological samples. We use a text classifier to identify reports of people tweeting about themselves and/or members of their household having COVID-19 infections. A probabilistic analysis is then performed to estimate the hSAR based on the number of self or household, and self and household tweets of COVID-19 infection. The analysis includes adjustments for a reluctance of Twitter users to tweet about household members, and the possibility that the secondary infection was not acquired within the household. Experimental results for the UK, both monthly and weekly, are reported for the period from January 2020 to February 2022. Our results agree with previously reported hSAR estimates, varying with the primary variants of concern, e. g. delta and omicron. The serial interval (SI) is based on the time between the two tweets that indicate a primary and secondary infection. Experimental results, though larger than the consensus, are qualitatively similar. The estimation of hSAR and SI using social media data constitutes a new tool that may help in characterizing, forecasting and managing outbreaks and pandemics in a faster, affordable, and more efficient manner.

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Concepts Keywords
Affordable Attack
February Based
Monthly Conventional
Pandemics Covid
Twitter Estimate
Household
Hsar
Infection
Interval
Media
Rate
Secondary
Serial
Social
Twitter

Semantics

Type Source Name
disease MESH COVID-19
disease IDO contact tracing
disease MESH infections
disease IDO infection
disease MESH secondary infection
disease VO monthly
disease VO time
disease VO efficient
disease MESH Long Covid
drug DRUGBANK Naproxen
disease VO vaccination
disease VO population
disease MESH influenza
disease IDO primary infection
drug DRUGBANK Flunarizine
drug DRUGBANK Trestolone
drug DRUGBANK Coenzyme M
disease VO vaccine dose
disease IDO replication
disease VO USA
disease MESH infectious diseases
disease MESH sexually transmitted diseases
disease MESH dengue
drug DRUGBANK Alpha-1-proteinase inhibitor
disease IDO country
drug DRUGBANK Esomeprazole
drug DRUGBANK Etoperidone
disease IDO process
drug DRUGBANK Aspartame
disease VO protocol
disease VO vaccine
disease VO immunization
disease MESH Respiratory Diseases
disease MESH Viral Diseases
disease MESH adverse drug reactions
disease MESH neurodegenerative disorders
disease VO Viruses
disease VO report
disease MESH monkeypox
disease IDO symptom
drug DRUGBANK Indoleacetic acid
disease IDO algorithm
drug DRUGBANK Troleandomycin

Original Article

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