In Silico Design of miniACE2 Decoys with In Vitro Enhanced Neutralization Activity against SARS-CoV-2, Encompassing Omicron Subvariants.

In Silico Design of miniACE2 Decoys with In Vitro Enhanced Neutralization Activity against SARS-CoV-2, Encompassing Omicron Subvariants.

Publication date: Oct 08, 2024

The COVID-19 pandemic has overwhelmed healthcare systems and triggered global economic downturns. While vaccines have reduced the lethality rate of SARS-CoV-2 to 0. 9% as of October 2024, the continuous evolution of variants remains a significant public health challenge. Next-generation medical therapies offer hope in addressing this threat, especially for immunocompromised individuals who experience prolonged infections and severe illnesses, contributing to viral evolution. These cases increase the risk of new variants emerging. This study explores miniACE2 decoys as a novel strategy to counteract SARS-CoV-2 variants. Using in silico design and molecular dynamics, blocking proteins (BPs) were developed with stronger binding affinity for the receptor-binding domain of multiple variants than naturally soluble human ACE2. The BPs were expressed in E. coli and tested in vitro, showing promising neutralizing effects. Notably, miniACE2 BP9 exhibited an average IC of 4. 9 ug/mL across several variants, including the Wuhan strain, Mu, Omicron BA. 1, and BA. 2 This low IC50 demonstrates the potent neutralizing ability of BP9, indicating its efficacy at low concentrations. Based on these findings, BP9 has emerged as a promising therapeutic candidate for combating SARS-CoV-2 and its evolving variants, thereby positioning it as a potential emergency biopharmaceutical.

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Concepts Keywords
Immunocompromised ACE2 protein, human
Miniace2 ACE2-decoys
Prolonged Angiotensin-Converting Enzyme 2
Viral Angiotensin-Converting Enzyme 2
Antibodies, Neutralizing
Antibodies, Neutralizing
Betacoronavirus
Computer Simulation
COVID-19
Humans
miniACE2
Molecular Dynamics Simulation
Neutralization Tests
Pandemics
Protein Binding
SARS-CoV-2
Spike Glycoprotein, Coronavirus
Spike Glycoprotein, Coronavirus
spike protein, SARS-CoV-2

Semantics

Type Source Name
disease MESH COVID-19 pandemic
disease MESH infections
disease MESH emergency
drug DRUGBANK Coenzyme M
disease MESH infectious diseases
disease IDO infection
disease MESH mutation rate
disease IDO host
drug DRUGBANK Amino acids
disease MESH Influenza
drug DRUGBANK L-Asparagine
disease MESH pneumonia
disease MESH viral load
drug DRUGBANK Trestolone
disease IDO algorithm
disease IDO production
disease MESH dissociation
drug DRUGBANK Histidine
drug DRUGBANK Amber
drug DRUGBANK L-Cysteine
drug DRUGBANK Isopropyl beta-D-thiogalactopyranoside
drug DRUGBANK Sodium lauryl sulfate
drug DRUGBANK Urea
disease IDO assay
drug DRUGBANK Guanosine
drug DRUGBANK (S)-Des-Me-Ampa
disease MESH breakthrough infection
disease MESH reinfection
disease MESH Long COVID
drug DRUGBANK Carboxyamidotriazole
drug DRUGBANK Isoxaflutole
disease MESH zoonotic spillover
disease IDO cell
disease MESH lymphopenia
pathway REACTOME Release
disease IDO intervention
disease MESH lung diseases
disease MESH immunocompromised patients

Original Article

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