Leveraging environmental microbial indicators in wastewater for data-driven disease diagnostics.

Publication date: Oct 10, 2024

Wastewater-based surveillance (WBS) is an emerging tool for monitoring the spread of infectious diseases, such as SARS-CoV-2, in community settings. Environmental factors, including water quality parameters and seasonal variations, may influence the prevalence of viral particles in wastewater. This study aims to explore the relationships between these factors and the incidence of SARS-CoV-2 across 28 monitoring sites, spanning different seasons and water strata. Samples were collected from 28 sites, accounting for seasonal and spatial (surface and intermediate water layers) variations. Key physicochemical parameters, heavy metals, and minerals were measured, and viral presence was detected using RT-qPCR. After data preprocessing, correlation analyses identified 19 relevant environmental parameters. Unsupervised learning algorithms, including K-means and K-medoid clustering, were employed to categorize the data into four distinct clusters, revealing patterns of viral positivity and environmental conditions. Cluster analysis indicated that seasonal variations and water quality characteristics significantly influenced SARS-CoV-2 positivity rates. The four clusters demonstrated distinct associations between environmental factors and viral prevalence, with certain clusters correlating with higher viral loads in specific seasons. The clustering patterns varied across sample sites, reflecting the diverse environmental conditions and their influence on viral detection. The findings underscore the critical role of environmental factors, such as water quality and seasonality, in shaping the dynamics of SARS-CoV-2 prevalence in wastewater. These insights provide a deeper understanding of the complex interplay between environmental contexts and disease spread. By utilizing WBS and advanced data analysis techniques, this study offers a robust framework for future research aimed at enhancing public health surveillance and interventions.

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Concepts Keywords
Accounting environmental factors
Biotechnol machine learning (ML)
Microbial public healh
Seasonality SARS-CoV-2
Viral wastewater-based surveillance (WBS)

Semantics

Type Source Name
disease MESH infectious diseases
disease MESH water quality
drug DRUGBANK Water
disease IDO role
drug DRUGBANK Coenzyme M
drug DRUGBANK Boron
pathway REACTOME Reproduction
disease MESH waterborne diseases
disease MESH cholera
disease MESH typhoid
disease IDO process
drug DRUGBANK Oxygen
drug DRUGBANK Cadmium
drug DRUGBANK Selenium
disease MESH mutation rates
disease MESH COVID 19
disease MESH infection
pathway REACTOME Digestion
drug DRUGBANK Polyethylene glycol
disease IDO nucleic acid
disease IDO assay
disease IDO algorithm
disease IDO object
drug DRUGBANK Tropicamide
drug DRUGBANK Phenformin
drug DRUGBANK Calcium
drug DRUGBANK Magnesium
drug DRUGBANK Iron
drug DRUGBANK Chloride ion
drug DRUGBANK Podofilox
disease IDO quality
drug DRUGBANK Magnesium sulfate
drug DRUGBANK Pidolic Acid
disease IDO site
disease MESH Viral load
disease MESH aids
disease IDO intervention
drug DRUGBANK Dihydrostreptomycin
drug DRUGBANK Platinum
disease IDO bacteria
disease IDO infectivity
disease IDO pathogen surveillance
drug DRUGBANK Cefradine
drug DRUGBANK L-Phenylalanine

Original Article

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