Antigenic Imprinting Dominates Humoral Responses to New Variants of SARS-CoV-2 in a Hamster Model of COVID-19.

Publication date: Dec 14, 2024

The emergence of SARS-CoV-2 variants escaping immunity challenges the efficacy of current vaccines. Here, we investigated humoral recall responses and vaccine-mediated protection in Syrian hamsters immunized with the third-generation Comirnaty Omicron XBB. 1.5-adapted COVID-19 mRNA vaccine, followed by infection with either antigenically closely (EG. 5.1) or distantly related (JN. 1) Omicron subvariants. Vaccination with the YF17D vector encoding a modified Gamma spike (YF-S0*) served as a control for SARS-CoV-2 immunity restricted to pre-Omicron variants. Our results show that both Comirnaty XBB. 1.5 and YF-S0* induce robust, however, poorly cross-reactive, neutralizing antibody (nAb) responses. In either case, total antibody and nAb levels increased following infection. Intriguingly, the specificity of these boosted nAbs did not match the respective challenge virus, but was skewed towards the primary antigen used for immunization, suggesting a marked impact of antigenic imprinting, confirmed by antigenic cartography. Furthermore, limited cross-reactivity and rapid decline in nAbs induced by Comirnaty XBB. 1.5 with EG. 5.1 and, more concerning, JN. 1, raises doubts about sustained vaccine efficacy against recent circulating Omicron subvariants. In conclusion, we demonstrate that antigenic imprinting plays a dominant role in shaping humoral immunity against emerging SARS-CoV-2 variants. Future vaccine design may have to address two major issues: (i) overcoming original antigenic sin that limits the breadth of a protective response towards emerging variants, and (ii) achieving sustained immunity that lasts for at least one season.

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Concepts Keywords
Cartography antigenic imprinting
Hamster mRNA vaccines
Lasts neutralizing antibodies
Syrian omicron subvariants
Vaccines vaccine efficacy

Semantics

Type Source Name
disease MESH COVID-19
disease MESH infection
disease IDO role
disease IDO host
drug DRUGBANK Coenzyme M
disease MESH mutation rate
disease MESH breakthrough infections
drug DRUGBANK Indoleacetic acid
drug DRUGBANK Methylergometrine
drug DRUGBANK L-Glutamine
drug DRUGBANK Puromycin
disease MESH AURA
disease IDO blood
drug DRUGBANK Phosphate ion
drug DRUGBANK Edetic Acid
drug DRUGBANK Aspartame
disease IDO assay
drug DRUGBANK Ethanol
disease MESH hemorrhage
disease MESH edema
disease MESH bronchopneumonia
disease MESH inflammation
disease MESH vasculitis
drug DRUGBANK Hyaluronic acid
drug DRUGBANK L-Valine
pathway KEGG Viral replication
disease MESH influenza
disease IDO production
disease MESH morbidity
disease MESH EMERGENCY
drug DRUGBANK Etoperidone
disease IDO facility
drug DRUGBANK Sodium hydroxide
disease MESH reinfections
drug DRUGBANK Guanosine
disease MESH pneumonia
disease IDO infectivity
disease IDO virulence

Original Article

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