Computational epitope-based vaccine design with bioinformatics approach; a review.

Publication date: Jan 15, 2025

The significance of vaccine development has gained heightened importance in light of the COVID-19 pandemic. In such critical circumstances, global citizens anticipate researchers in this field to swiftly identify a vaccine candidate to combat the pandemic’s root cause. It is widely recognized that the vaccine design process is traditionally both time-consuming and costly. However, a specialized subfield within bioinformatics, known as “multi-epitope vaccine design” or “reverse vaccinology,” has significantly decreased the time and costs of the vaccine design process. The methodology reverses itself in this subfield and finds a potential vaccine candidate by analyzing the pathogen’s genome. Leveraging the tools available in this domain, we strive to pinpoint the most suitable antigen for crafting a vaccine against our target. Once the optimal antigen is identified, the next step involves uncovering epitopes within this antigen. The immune system recognizes particular areas of an antigen as epitopes. By characterizing these crucial segments, we gain the opportunity to design a vaccine centered around these epitopes. Subsequently, after identifying and assembling the vital epitopes with the assistance of linkers and adjuvants, our vaccine candidate can be formulated. Finally, employing computational techniques, we can thoroughly evaluate the designed vaccine. This review article comprehensively covers the entire multi-epitope vaccine development process, starting from obtaining the pathogen’s genome to identifying the relevant vaccine candidate and concluding with an evaluation. Furthermore, we will delve into the essential tools needed at each stage, comparing and introducing them.

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Concepts Keywords
Bioinformatics Bioinformatics
Citizens Immunoinformatics
Costly Multi epitope vaccine
Covid Reverse vaccinology
Vaccine Vaccine design

Semantics

Type Source Name
disease MESH COVID-19 pandemic
disease IDO process
disease IDO pathogen
pathway REACTOME Immune System
disease IDO cell
drug DRUGBANK Coenzyme M
disease IDO production
disease MESH smallpox
disease MESH cowpox
disease IDO history
disease IDO host
disease MESH infection
disease MESH infectious diseases
pathway REACTOME Adaptive Immune System
disease IDO immunodeficiency
disease IDO blood
pathway REACTOME Apoptosis
disease IDO bacteria
disease MESH tumor
disease MESH body build
disease MESH histocompatibility
drug DRUGBANK Amino acids
pathway REACTOME Translation
disease IDO protein
disease IDO homo sapiens
disease IDO algorithm
pathway REACTOME Membrane Trafficking
disease IDO site
disease IDO organism
disease IDO immune response
disease MESH death
disease IDO quality
disease IDO virulence
disease IDO toxin
drug DRUGBANK Choline
pathway KEGG Proteasome
drug DRUGBANK Diphenylpyraline
disease MESH allergies

Original Article

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