Immune imprinting blunts omicron pathogenicity fluctuations and highlights the essential role of cellular immunity in SARS-CoV-2 infection.

Publication date: Jun 03, 2025

The emergence of Omicron variants challenged early SARS-CoV-2 vaccination and infection-induced immunity, leading to frequent breakthrough infections. While Omicron is generally considered less pathogenic, our retrospective clinical data and multi-species animal models revealed that subvariants BF. 7 and XBB. 1 exhibit increased pathogenicity compared to BA. 1. Despite escaping neutralization by immunity induced by the prototype strain or BA. 1, limited cross-immunity attenuated their virulence in hamsters to BA. 1 levels. Additionally, we revealed that heterologous secondary infections maximally expanded the immune imprinting landscape elicited by primary infection with the prototype strain. Furthermore, we confirmed the essential role of serum, CD4 T and CD8 T cell immune responses in antiviral cross-protection via immunodeficient mice and adoptive-transfer studies. These findings underscore the need for ongoing virulence surveillance, highlight the marginal benefit of vaccination against highly mutable RNA viruses in in early outbreak phase, and emphasize the importance of balanced humoral and cellular responses in vaccine design.

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Concepts Keywords
Breakthrough cellular immune response
Cd4 CP: Metabolism
Immunodeficient CP: Microbiology
Vaccines immune imprinting landscape
Virulence pathogenicity
preexisting cross-immunity
SARS-CoV-2

Semantics

Type Source Name
disease IDO role
disease MESH SARS-CoV-2 infection
pathway REACTOME SARS-CoV-2 Infection
disease MESH infection
disease MESH breakthrough infections
disease IDO virulence
disease MESH secondary infections
disease IDO primary infection
disease IDO cell
pathway REACTOME Metabolism

Original Article

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