Identification of SnRNA U6 as an endogenous reference gene for normalization of MiRNA expression data in COVID-19 patients.

Publication date: Jul 22, 2025

SARS-CoV-2, the virus responsible for COVID-19, exhibits structural differences compared to other coronaviruses that impact transmission dynamics and host response. Although vaccines have reduced severe hospitalizations and deaths, understanding the infection remains challenging, and finding viable biomarkers for disease severity would be beneficial. In this context, microRNAs (miRNAs) are a set of small non-coding RNAs that have emerged as potential biomarkers for numerous diseases. However, assessing miRNA expression requires the normalization of RT-qPCR data using appropriate endogenous reference genes. The selection of these reference genes remains a major challenge, directly impacting the accuracy of expression analyses. Although several small RNAs, including snRNAs, have been evaluated, there is still no consensus regarding the optimal reference genes for the normalization of plasma miRNA expression data in COVID-19 infection. This study evaluated five candidate genes-including RNU6B, snRNA U6 (small nuclear RNAs) and three miRNAs (miR-320a, miR-342-3p, and miR-328) as potential endogenous normalizers for analyzing miRNA expression in the plasma of COVID-19 patients. The snRNA U6 showed greater stability using a combination of statistical algorithms (NormFinder, RefFinder, BestKeeper, and GeNorm), indicating that this snRNA can be used as a robust internal reference for analysis in the plasma of COVID-19 patients.

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Concepts Keywords
Algorithms Adult
Bestkeeper Aged
Coronaviruses COVID-19
Hospitalizations Covid-19
Nuclear Female
Gene Expression Profiling
Humans
Male
MicroRNAs
MicroRNAs
Middle Aged
miRNA
Normalization
Reference Standards
RNA, Small Nuclear
RNA, Small Nuclear
RT-qPCR
SARS-CoV-2
SARS-CoV-2
snRNAU6

Semantics

Type Source Name
disease MESH COVID-19
disease IDO host
disease MESH infection
disease MESH pneumonia
disease MESH acute respiratory distress syndrome
disease MESH death
drug DRUGBANK Coenzyme M
disease MESH infectious diseases
disease MESH cancer
disease IDO algorithm
disease MESH tuberculosis
pathway KEGG Tuberculosis
pathway KEGG Spliceosome
disease MESH hepatocellular carcinoma
pathway KEGG Hepatocellular carcinoma
disease MESH carcinoma
disease MESH liver cirrhosis
disease MESH hepatitis
disease MESH privacy
disease IDO blood
disease IDO assay
drug DRUGBANK Edetic Acid
drug DRUGBANK Isopropyl Alcohol
drug DRUGBANK Ethanol
drug DRUGBANK Water

Original Article

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