Divergent resistance pathways amongst SARS-CoV-2 PLpro inhibitors highlight the need for scaffold diversity.

Divergent resistance pathways amongst SARS-CoV-2 PLpro inhibitors highlight the need for scaffold diversity.

Publication date: Sep 05, 2025

Drug-escape, where a target evolves to escape inhibition from a drug, has the potential to lead to cross-resistance where drugs that are structurally related or share similar binding mechanisms all become less effective. PLpro inhibitors are currently under development and many emerging PLpro inhibitors are derived from GRL0617, a repurposed SARS-CoV PLpro inhibitor with moderate activity against SARS-CoV-2. Two leading derivatives, PF-07957472 and Jun12682, demonstrate low nanomolar activity and display activity in mice. WEHI-P8 is structurally distinct but binds to a similar pocket adjacent to the active site as GRL0617-like compounds. Using deep mutational scanning, we assessed the potential for PLpro to develop resistance to PF-07957472, Jun12682, and WEHI-P8. PF-07957472 and Jun12682 exhibited largely overlapping escape mutations due to their shared scaffold and binding modes, whereas WEHI-P8 resistance mutations were distinct. These findings underscore the importance of developing structurally diverse inhibitors to minimize resistance risks and ensure that viral mutations against one compound do not compromise the efficacy of others.

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Concepts Keywords
Drugs Activity
Genes Cov
Jun12682 Drug
Mice Escape
Nanomolar Inhibitors
Jun12682
Mutations
P8
Pf
Plpro
Potential
Resistance
Sars
Scaffold
Wehi

Semantics

Type Source Name
disease IDO site
disease IDO history
disease IDO process
disease MESH COVID 19 pandemic
disease MESH infections
disease MESH acute disease
disease MESH Sequelae
disease MESH long COVID
disease IDO infection
pathway KEGG Viral replication
drug DRUGBANK Papain
drug DRUGBANK Ritonavir
drug DRUGBANK L-Leucine
pathway REACTOME Reproduction
drug DRUGBANK Succimer
disease IDO assay
disease IDO cell
drug DRUGBANK Coenzyme M
drug DRUGBANK Puromycin
disease IDO protein
drug DRUGBANK Sodium lauryl sulfate
drug DRUGBANK L-Lysine
drug DRUGBANK Flunarizine
drug DRUGBANK Pentaerythritol tetranitrate
drug DRUGBANK Nitrogen
disease IDO susceptibility
drug DRUGBANK L-Arginine
drug DRUGBANK Cyclohexanol
drug DRUGBANK Pyrazole
disease IDO replication
drug DRUGBANK Oxygen
drug DRUGBANK L-Glutamine
disease IDO production
drug DRUGBANK Calcium Phosphate
drug DRUGBANK Dimethyl sulfoxide
drug DRUGBANK Doxycycline
disease IDO facility
drug DRUGBANK Aspartame
drug DRUGBANK Trestolone
drug DRUGBANK Huperzine B
drug DRUGBANK Kanamycin
drug DRUGBANK Isopropyl beta-D-thiogalactopyranoside
drug DRUGBANK Imidazole
drug DRUGBANK Lysozyme
drug DRUGBANK Water
drug DRUGBANK Formic Acid
drug DRUGBANK Acetate ion
drug DRUGBANK Tromethamine
drug DRUGBANK Glutathione
drug DRUGBANK Esomeprazole
drug DRUGBANK Albendazole
drug DRUGBANK Cysteamine
drug DRUGBANK Ranitidine
disease MESH coronavirus infection

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