A data-driven analysis and forecasting of Leishmaniasis-COVID-19 co-infection model using ensemble Kalman filter.

Publication date: Jun 08, 2026

Co-infections involving viruses and parasites pose a major concern for global health, particularly in areas where both infections are endemic. In this paper, we present a co-infection epidemic model that considers the transmission dynamics of COVID-19 and leishmaniasis among human and vector populations. The model is developed based on considering the specific latency periods of each infection, treatment, recovery, reinfection, and cross-infection process. The Ensemble Kalman Filter technique is applied to estimate the key model’s parameters using real data, incorporating temporal variation and uncertainty in disease transmission and progression. The model is first divided into COVID-19-only and leishmaniasis-only sub-models to validate the dynamics of each disease over 12 months. For the COVID-19 sub-model, several important estimated parameters include transmission rate [Formula: see text], disease mortality [Formula: see text], and treatment rate [Formula: see text], indicating a relatively slow response to disease treatments and moderate disease severity. On the other hand, the Leishmaniasis model had a slightly lower transmission rate [Formula: see text], and a considerably higher treatment rate [Formula: see text], implying more efficient case management of the vector-borne disease. The complete model for co-infection, estimated from three groups of six months of data, exhibits synergistic effects through interaction parameters [Formula: see text] and [Formula: see text] that reflect a higher likelihood of acquiring another disease while already infected with the first. The model predictions were highly consistent with observed data, and the estimated parameters show significant temporal variability. Projections over a three-month horizon demonstrated strong predictive performance. These results underscore the need for an integrated surveillance and control framework for co-endemic disease management.

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Concepts Keywords
Covid Co-infection model
Efficient COVID-19
Month EnKF
Reinfection Forecasting
Viruses Leishmaniasis
Parameter estimation
Real data analysis

Semantics

Type Source Name
disease MESH Leishmaniasis
pathway KEGG Leishmaniasis
disease MESH COVID-19
disease MESH co-infection
disease MESH infections
disease MESH reinfection
disease MESH vector-borne disease
pathway REACTOME Reproduction
disease MESH included
disease MESH Dar
drug DRUGBANK Coenzyme M
disease MESH ics
disease MESH cross infection
pathway REACTOME Immune System
disease MESH cytokine storm
disease MESH visceral Leishmaniasis
disease MESH malnutrition
disease MESH infectious diseases
disease MESH dengue
disease MESH Mpox
disease MESH hepatitis
disease MESH AIDS
disease MESH malaria
pathway KEGG Malaria
disease MESH lymphatic filariasis
drug DRUGBANK Ilex paraguariensis leaf
disease MESH death
disease MESH eco
disease MESH lymphopenia
pathway REACTOME Leishmania infection
disease MESH neglected tropical disease
disease MESH dis
drug DRUGBANK Piroxicam
drug DRUGBANK Spinosad
drug DRUGBANK (S)-Des-Me-Ampa
disease MESH influenza
disease MESH parasite infections
drug DRUGBANK Guanosine
disease MESH leptospirosis
disease MESH chronic hepatitis

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