Disrupted variance in respiratory illness presentation patterns in New Zealand primary care through and after the SARS-CoV-2 pandemic: an observational cohort study using automated mining of electronic health records and clinical text.

Publication date: Jun 25, 2026

To identify and compare respiratory illness presentation rates and service utilisation to primary care in Aotearoa, New Zealand (NZ) before, through and after the COVID-19 pandemic. A natural language processing (NLP) software interference algorithm was used to interrogate quantitative and qualitative cross-sectional and retrospective cohort data from clinical consultation notes. Primary care presentations across Aotearoa, NZ, encompassing both urban and rural areas. Electronic records were obtained from general practice interactions from 2018 to end of 2023. Participants consisted of 37 consenting practices from eight districts. A total of 10 421 399 unique medical interactions were processed by the NLP software, of which 15. 1% (1 573 631) were related to a respiratory issue. This ranged from 14. 2% and 13. 7% in 2018 and 2019 to a peak of 25. 2% in 2022. Expected patterns of seasonal variation were observed prepandemic with small variance in mean rates. Due to the COVID-19 pandemic, border closures and then SARS-CoV-2 arrival, there was significant disruption to previous seasonal patterns across all respiratory illness presentations in primary care. Patterns vary markedly across different respiratory groups. While the degree of variance has reduced, there continues to be marked disruption of pre-COVID patterns. Primary care respiratory presentations in NZ continue to experience persistent variation from the pre-COVID typical seasonal presentation patterns. There is significant change in presentations, likely due to changing disease prevalence, but also to changing patient and provider behaviour. These results have implications for primary care workload management and public health policy.

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Concepts Keywords
Pandemic Clinical audit
Patient COVID-19
Rural Primary Health Care
Zealand

Semantics

Type Source Name
disease MESH COVID-19 pandemic
disease MESH chronic conditions
disease MESH asthma
pathway KEGG Asthma
drug DRUGBANK Indoleacetic acid
disease MESH influenza
disease MESH respiratory infections
disease MESH included
disease MESH GPs
disease MESH face
disease MESH rhinitis
disease MESH otitis media
disease MESH sore throat
disease MESH infection
disease MESH cough
disease MESH fever
drug DRUGBANK Gold
drug DRUGBANK MCC
disease MESH strain
disease MESH allergic rhinitis
disease MESH emergency
disease MESH bronchiolitis
disease MESH virus infections
disease MESH aids
disease MESH ACD
pathway REACTOME Translation
disease MESH ambulatory care sensitive conditions
drug DRUGBANK Etoperidone
disease MESH Workplace Stress
disease MESH infectious diseases
disease MESH Allergy

Original Article

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