Consistent functional properties of MSC-exosomes from different batches revealed by comparative multi-omics, bioinformatics and functional tests.

Publication date: Jul 21, 2026

Mesenchymal stromal cell-derived exosomes (MSC-EXOs), also called Extracellular Vesicles (EVs), exhibit anti-inflammatory effects in various diseases and are being developed for clinical use. For instance, MSC-EXO promotes skin healing post-laser therapy and improves outcomes in severe COVID-19. Selecting an optimal cellular source is critical for the therapeutic development of MSC-EXO. It has been suggested that GMP-produced MSC-exosomes have slightly different molecular content. This study therefore aimed to compare adipose tissue-derived MSC-EXO (ASC-EXO) from three healthy donors, isolated and characterized under GMP conditions. Exosomes were analyzed by nano-tracking analysis (NTA), cryo-electron microscopy, tetraspanin profiling, and multi-omics (proteomics, lipidomics, small RNA sequencing), as well as bioinformatics. Functional assays quantified anti-inflammatory effects in RAW264. 7 macrophages and collagen production by human dermal fibroblasts (HDF). In vivo efficacy of ASC-EXOs was evaluated in a house dust mite antigen-induced atopic dermatitis mouse model through histopathological evaluation of ear thickness and differential cell counting. No significant batch differences were observed in ASC-EXO yield or characteristics. Omics analyses revealed minor variations in protein, lipid, and small RNA cargo among the three batches, but GO-term bioinformatics indicated highly similar functional profiles. IL-6 suppression in RAW264. 7 cells and cell proliferation and collagen production by HDF were similar among the ASC-EXO batches. CD73 enzymatic activity was consistent among batches. In vivo, the ASC-EXOs reduced skin thickness and eosinophilia in an atopic dermatitis model, with similar effects among the batches. In summary, ASC-EXOs from all batches demonstrated comparable anti-inflammatory and collagen-modulating effects in vitro, and similar inhibition of atopic dermatitis signs in vivo. We suggest that biological efficacy combined with bioinformatics analysis should guide MSC-EXO therapeutic quality control assays. These findings support the development of ASC-EXOs for clinical applications.

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Concepts Keywords
Bioinformatics Anti-inflammation
Cd73 Exosomes
Inflammatory Extracellular vesicle
Therapy Mesenchymal stem cell
Vitro Multi-omics
Regeneration

Semantics

Type Source Name
disease MESH COVID-19
drug DRUGBANK N-acetylsulfanilyl chloride
disease MESH atopic dermatitis
disease MESH eosinophilia
disease MESH Park
pathway REACTOME Reproduction
disease MESH included
disease MESH Park2
disease MESH Park3
drug DRUGBANK Coenzyme M
disease MESH inflammation
disease MESH infection
disease MESH lung injury
disease MESH acne
disease MESH scars
drug DRUGBANK Nitrogen
disease MESH PDs
drug DRUGBANK Fosfomycin
disease MESH FCM
disease MESH DAVID
pathway KEGG Focal adhesion
pathway REACTOME Translation
drug DRUGBANK Phosphatidylethanolamine
drug DRUGBANK Phosphatidyl serine
drug DRUGBANK Cholesterol
drug DRUGBANK Cardiolipin
drug DRUGBANK Omega-3 fatty acids
disease MESH LPS
drug DRUGBANK Prednisolone
disease MESH skin diseases
drug DRUGBANK Sphingosine
drug DRUGBANK Phosphate ion
drug DRUGBANK Diphenylpyraline
drug DRUGBANK Dupilumab
drug DRUGBANK Methylergometrine
drug DRUGBANK Trypsin
disease MESH FBS
drug DRUGBANK Basic Fibroblast Growth Factor
disease MESH sterility
drug DRUGBANK Medical air
drug DRUGBANK Tretamine
drug DRUGBANK Tricyclazole
drug DRUGBANK Activated charcoal
disease MESH CCD
disease MESH image
drug DRUGBANK Streptomycin
drug DRUGBANK Dexamethasone
disease MESH PTR
drug DRUGBANK Tromethamine
drug DRUGBANK Adenosine
drug DRUGBANK Formaldehyde
disease MESH PBS
drug DRUGBANK Human Serum Albumin
drug DRUGBANK Sodium lauryl sulfate
drug DRUGBANK Pentaerythritol tetranitrate
drug DRUGBANK Isoflurane
disease MESH pain
disease MESH opportunistic infections
disease MESH weight loss
disease MESH Rad
drug DRUGBANK Ethanol

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