Canonical Antibodies Adopt Distinct Binding Modes to Recognize Viral Glycan Shields.

Canonical Antibodies Adopt Distinct Binding Modes to Recognize Viral Glycan Shields.

Publication date: Aug 14, 2026

Viral entry glycoproteins are often shielded from immune recognition by dense N-linked glycans that limit antibody access to protein epitopes. While glycan-reactive antibodies with unusual architectures have been described, how canonical Y-shaped antibodies engage these glycan-rich surfaces remains poorly defined. Here, we characterize two human antibodies, VRC35 and VRC36, isolated from an HIV-1-infected donor, that recognize diverse glycosylated viral glycoproteins. Cryo-electron microscopy structural analyses of these antibodies in complex with viral entry glycoproteins, including HIV-1 envelope, influenza hemagglutinin, SARS-CoV-2 spike, and the Lassa virus glycoprotein complex, reveal adaptive Fab stoichiometries ranging from single-Fab binding to dimeric and higher-order assemblies are mediated by intra- and inter-IgG interactions that depend on local glycan organization. Dense glycan clustering on HIV-1 and influenza glycoproteins supports multivalent Fab assemblies and correlates with neutralization activity, whereas sparse glycan environments on SARS-CoV-2 and Lassa virus favor weak or heterogeneous engagement without neutralization. Structural and mutational analyses further demonstrate that homotypic Fab-Fab interactions stabilize multivalent engagement and contribute to neutralizing activity. Together, these findings define a structural framework in which viral glycan organization constrains antibody valency and engagement, while somatic hypermutation contributes to the acquisition of homotypic Fab-Fab interactions that facilitate multivalent recognition of viral glycan shields.

Open Access PDF

Concepts Keywords
Antibodies broadly neutralizing antibody
Hiv cryo‐EM
Influenza glycan recognition
Rich HIV‐1 envelope
Weak homotypic assembly
multivalent binding
somatic hypermutation
viral glycan shield

Semantics

Type Source Name
disease MESH influenza
drug DRUGBANK Coenzyme M
disease MESH David
disease MESH Allergy
disease MESH Infectious Diseases
disease MESH Viral Diseases
disease MESH AIDS
pathway REACTOME Reproduction
drug DRUGBANK Glycine
pathway REACTOME Immune System
disease MESH ich
drug DRUGBANK Piroxicam
disease MESH strain
disease MESH RBS
drug DRUGBANK Mannose
disease MESH NTD
disease MESH dis
drug DRUGBANK L-Alanine
drug DRUGBANK Amino acids
disease MESH included
drug DRUGBANK L-Arginine
drug DRUGBANK L-Tryptophan
drug DRUGBANK Trestolone
disease MESH PBS
drug DRUGBANK Kifunensine
disease MESH APC
drug DRUGBANK Dimercaprol
disease MESH NHS
drug DRUGBANK Biotin
drug DRUGBANK Tromethamine
drug DRUGBANK Formaldehyde
drug DRUGBANK L-Asparagine
drug DRUGBANK Serine
drug DRUGBANK L-Threonine
disease MESH infection
drug DRUGBANK Phosphate ion
drug DRUGBANK Glycerin
drug DRUGBANK Imidazole
drug DRUGBANK Activated charcoal
drug DRUGBANK Copper
drug DRUGBANK Titanium
disease MESH image
drug DRUGBANK Gold
disease MESH dissociation
drug DRUGBANK Edetic Acid
drug DRUGBANK Immune Globulin Human
pathway REACTOME Digestion
drug DRUGBANK Abacavir
drug DRUGBANK Trypsin
disease MESH hrs
drug DRUGBANK L-Cysteine
drug DRUGBANK Methionine
drug DRUGBANK Cardiolipin
disease MESH FBS
drug DRUGBANK Streptomycin
drug DRUGBANK Rifampicin
drug DRUGBANK Indoleacetic acid
disease MESH Malaria
pathway KEGG Malaria
drug DRUGBANK Rituximab
pathway KEGG Virion
disease MESH Park
disease MESH Ito

Original Article

(Visited 11 times, 1 visits today)

Leave a Comment

Your email address will not be published. Required fields are marked *